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Buyer guide · Updated 23 Oct 2026 · By the Filtsap technical team

RO membrane cleaning procedure and chemicals

Short answerClean an RO membrane when normalised permeate flow drops 10 to 15 percent, salt passage rises 5 to 10 percent, or pressure drop rises 15 percent from the clean baseline. Use a low-pH clean (citric acid or hydrochloric acid at about pH 2) for scale and iron, and a high-pH clean (caustic at about pH 11 to 12, often with a detergent) for organics and biofouling. Always follow the membrane maker's pH and temperature limits.

When to clean

Compare today's readings with the readings when the membranes were new or freshly cleaned, corrected for temperature and pressure. Clean when any one of these happens:

  • Normalised permeate flow has dropped 10 to 15 percent
  • Normalised salt passage has risen 5 to 10 percent (permeate TDS going up on your TDS meter)
  • Pressure drop across a stage has risen 15 percent

Cleaning early works better. A membrane that has lost 30 percent of its flow is much harder to recover.

Which chemical for which foulant

FoulantSignsCleaning
Calcium carbonate scaleLast stage worst, salt passage upLow pH: citric acid 2% or HCl to pH 2
Iron and metal oxidesBrown deposit, first stageLow pH: citric acid 2% or sodium hydrosulphite
Organics and biofilmFirst stage, pressure drop up, slimeHigh pH: NaOH to pH 11–12, with EDTA or SDS detergent
Silt and colloidsFirst stage, pressure drop upHigh pH clean first, then low pH

When the foulant is unknown, clean at high pH first and then at low pH. Cleaning at low pH first can set organic fouling harder.

CIP procedure, step by step

  1. Mix the cleaning solution in the CIP tank with RO permeate, not raw water. Heat it if the membrane allows (often up to 35 to 40 °C).
  2. Low-flow pump: push the solution into the vessels at low pressure and low flow to displace the feed water. Send the first displaced water to drain.
  3. Recirculate for 30 to 60 minutes. Check pH and adjust; if the solution changes colour quickly, drain it and mix fresh.
  4. Soak for 1 to 8 hours for heavy fouling.
  5. High-flow recirculation for 30 to 60 minutes to flush loosened deposits.
  6. Rinse with RO permeate until the outlet pH matches the inlet.
  7. Restart the RO, send the first permeate to drain, and record new baseline readings.

Prevent the next clean

If membranes no longer recover after cleaning, we supply replacement RO membranes, pressure vessels and adaptor kits.

FAQs

How often should RO membranes be cleaned?

Typically every 3 to 12 months, depending on feed water and pre-treatment. Clean when flow drops 10 to 15 percent or salt passage rises 5 to 10 percent.

Which chemical is used for RO membrane cleaning?

Citric acid or hydrochloric acid at low pH for scale and iron, and caustic soda at high pH with a detergent such as EDTA or SDS for organics and biofouling.

Can I clean an RO membrane with raw water?

No. Mix and rinse with RO permeate so the hardness and chlorine in raw water do not re-foul or damage the membrane.

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